Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat
نویسندگان
چکیده
منابع مشابه
GABA Shunt in Durum Wheat
Plant responses to salinity are complex, especially when combined with other stresses, and involve many changes in gene expression and metabolic fluxes. Until now, plant stress studies have been mainly dealt only with a single stress approach. However, plants exposed to multiple stresses at the same time, a combinatorial approach reflecting real-world scenarios, show tailored responses complete...
متن کاملPotential to breed for mycorrhizal association in durum wheat.
The selection of genotypes under high soil fertility may alter the effectiveness of mycorrhizal symbioses naturally forming between crop plants and the mycorrhizal fungi residing in cultivated fields. We tested the hypothesis that the mycorrhizal symbiosis of 5 landraces functions better than the mycorrhizal symbiosis of 27 cultivars of durum wheat that were bred after the development of the fe...
متن کاملAssembly of fingerprint contigs: parallelized FPC
SUMMARY One of the more common uses of the program FingerPrint Contigs (FPC) is to assemble random restriction digest 'fingerprints' of overlapping genomic clones into contigs. To improve the rate of assembling contigs from large fingerprint databases we have adapted FPC so that it can be run in parallel on multiple processors and servers. The current version of 'parallelized FPC' has been used...
متن کاملOsmoregulation capacity in Bulgarian durum wheat
The phenotypic variation in osmotic adjustment (OA) capacity of five Bulgarian winter durum wheat genotypes and their progenies was determined using a modified method based on the measurement of seedling growth suppression after three-day exposure to osmotic stress induced by 1 mol/L sucrose. The genetic parameters of the studied trait in a diallel crossing scheme, including the selected genoty...
متن کاملFloret development of durum wheat in response to nitrogen availability
In Mediterranean durum wheat production, nitrogen (N) fertilization may be important to stabilize and increase yields. Wheat yield responses to N fertilization are usually related to grains per m(2), which in turn is the consequence of processes related to floret development (floret initiation followed by floret death/survival) during stem elongation. The literature is rather scarce in terms of...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2013
ISSN: 1471-2105
DOI: 10.1186/1471-2105-14-s15-s15